Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| ESCA | rs72844526 | chr2:138331278 | A/G | 1.3E-6 | 140 | 7.03 | 14.9 | 1.4 | KM Plot |
| ESCA | rs73372549 | chr21:46255779 | C/T | 2.89E-5 | 140 | 6.77 | 7.53 | 2.63 | KM Plot |
| ESCA | rs74506539 | chr1:247178854 | C/A | 1.02E-5 | 139 | 6.77 | 8.9 | 3.87 | KM Plot |
| ESCA | rs7521422 | chr1:247197025 | G/A | 4.55E-5 | 140 | 6.43 | 14.13 | 3.87 | KM Plot |
| ESCA | rs7535264 | chr1:247194120 | C/T | 3.92E-5 | 141 | 6.43 | 16.95 | 3.87 | KM Plot |
| ESCA | rs7543803 | chr1:247206885 | C/T | 3.53E-5 | 142 | 6.5 | 8.9 | 3.87 | KM Plot |
| ESCA | rs7549531 | chr1:247214346 | C/G | 4.47E-5 | 140 | 6.5 | 8.6 | 3.87 | KM Plot |
| ESCA | rs7550095 | chr1:247260362 | A/T | 3.17E-5 | 142 | 6.5 | 14.13 | 3.87 | KM Plot |
| ESCA | rs7551896 | chr1:247214470 | C/T | 4.87E-5 | 139 | 6.5 | 11.2 | 3.87 | KM Plot |
| ESCA | rs75662930 | chr21:46245986 | A/G | 3.25E-5 | 139 | 6.5 | 7.53 | 2.63 | KM Plot |
| ESCA | rs76249670 | chr21:46250113 | C/T | 3.25E-5 | 139 | 6.5 | 7.53 | 2.63 | KM Plot |
| ESCA | rs7661433 | chr4:39488737 | A/G | 3.4E-6 | 137 | 7.03 | 7.27 | 0.33 | KM Plot |
| ESCA | rs76760326 | chr1:247198672 | G/A | 4.55E-5 | 140 | 6.47 | 17.23 | 3.87 | KM Plot |
| ESCA | rs77319655 | chr1:247196995 | A/G | 4.64E-5 | 139 | 7.03 | 16.95 | 3.87 | KM Plot |
| ESCA | rs78921694 | chr21:46248254 | A/C | 3.25E-5 | 139 | 6.5 | 7.53 | 2.63 | KM Plot |